Topics: Life science. Biology. Biotechnology and Biomedical research. Bioinformatics and Computational Biology. Programming for Biologists. Lab protocols and methods. Paper reviews. Data science. Programming in R, C, C++, Perl, Python, Excel, basic and advanced Unix, shell scripting, awk scripting, vim editing, regular expressions. Custom script development.
This is a bash/awk script that will parse multiple individual vcf file and for your input SNP of interest output a table with VCF tags including genotype GT, genotype quality GQ, allele depth AD etc, values for VCF tags, sample names/IDs from the VCF file, input SNP ID. Useful to assess genotype and quality for a particular SNP of interest.