Friday, July 11, 2014

How to convert multiple bigBed files to bed

If you want to convert bigBed to bed download bigBedToBed from
http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64.v287/
(for linux 64 bit binary)
Then to convert multiple bigBed from your folder type:

for filename in *; do ./bigBedToBed ${filename} ${filename}.bed; done

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