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How to make Fastq files from SRA to be recognized by Galaxy
If you downloaded Fastq files from SRA database and if you uploaded these files to Galaxy and Galaxy is not able to recognize them as fastq files for Bowtie or BWA mapping, you need to change the attributes of the fastq files.
Go to Edit attributes. Datatype Change from fastq to fastqsanger Save
After this your files will be present at the dropdown menu when zou select Bowtie or BWA