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Hi, I downloaded the ChIP-seq bam file (hg19) from UCSC, then I sorted and indexed with samtools.but after I loaded the sorted bam file into IGV, nothing showed up in the track. Do you have an idea why? Thanks.I am using IGV_2.3.5 ubuntu 12.04
I'm not sure what happened there. Maybe try an older version of IGV, I know sometimes I had problems with the new release.
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