Topics: Life sciences, Biology, Biomedical research, Lab protocols and methods, Bioinformatics and Computational Biology, Programming for Biologists, R, Excel, C, C++, Perl, Python, Basic and Advanced Unix, shell scripting, Ubuntu. Data analysis, awk scripting, vim editing, regular expressions. Next gen. sequencing. Bioconductor packages, biomaRt, Bowtie, BWA, Cufflinks, STAR, bedtools, samtools, Galaxy, GATK, impute, shapeit. Custom script development. Reviews of scientific articles.
Hi, I downloaded the ChIP-seq bam file (hg19) from UCSC, then I sorted and indexed with samtools.but after I loaded the sorted bam file into IGV, nothing showed up in the track. Do you have an idea why? Thanks.I am using IGV_2.3.5 ubuntu 12.04
I'm not sure what happened there. Maybe try an older version of IGV, I know sometimes I had problems with the new release.