Monday, November 12, 2012

How to extract DNA sequence from the genome of interest via UCSC Genome Browser

To extract a sequence of interest if you have the coordinates:
Go to http://genome.ucsc.edu
Genomes
Select Genome and Assembly that corespond to your coordinates
Paste coordinates into Search term
Submit

When the location opens in the Genome Browser
Click View / DNA
Get DNA

Alternativelly if you don't have the coordinates you can simply select the region of interest in the UCSC Genome Browser and then:
Click View / DNA
Get DNA

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